Plant MITE

SE0430009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2379
Brassica rapa
SE0430009
hAT
Hat4
A10:9052012-9052204
AATAGGAC
CAGTGGCGGAGGCA

Secondary structure and sequence

TSD TIR

5'

3'

AATAGGAC           G  AAATT    TTTA      --     A    AACAAA  -      G   GGGTCAATAGGCTAAATTCACCAGATTTTT
        CAGTGGCGGAG CA     TTAT    GAGGGG  TCAAT TGAT      TG TATTTT CAA                              
        ||||||||||| ||     ||||    ||||||  ||||| ||||      || |||||| |||                               
        GTCACCGCCTC GT     GATA    CTCCCC  AGTTA ACTG      CA TTAAAA ACG                              
CAGGATAA           G  CACAC    ----      AC     -    --GGTA  G      -   TTTTTGTTTTTAAATGAACATAAAAGTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430009

AATAGGACCAGTGGCGGAGGCAAAATTTTATTTTAGAGGGGTCAATATGATAACAAATGTATTTTGCAAGGGTCAATAGGCTAAATTCACCAGATTTTTCTTTGAAAATACAAGTAAATTTTTGTTTTTGCAAAAATTGACATGGGTCAATTGACACCCCTCATAGCACACTGGCTCCGCCACTGAATAGGAC

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