SE0410010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2380
  • Brassica rapa
  • SE0410010
  • Tc1/Mariner
  • St2
  • A01:7386971-7387242
  • TA
  • TACTCCCTCTGTTTTTTAAAGATGGATGTTCTAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                    -AA       GTTTCCAAAAGATGTATTTTTCATGTTTTCAAAGCATATTTTGTCAACTAATAATGAAAAATTGTGTGTTTCAAAAATATTAATTACATT
TACTCCCTCTGTTTTTTAAAGATGGATGTTCTAGGA   ATATTTT                                                                                          
||||||||||||||||||||||||||||||||||||   |||||||                                                                                          T
ATGAGGGAGACAAAAAATTTCTACTTACAAGATCCT   AGTGTGA                                                                                          
                                    AAA       ATAATTCTTTGGTATAATTTTGAATCAATAATTATGTATCCAAAAACATTGAAATATAAAGAATATAAAAATTTGGTTATCCTAATTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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