Plant MITE

SE0430011

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2381
Brassica rapa
SE0430011
hAT
Hat5
A06:17607766-17608406
CATATGTT
CATATGTTTAGGCCTGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

         TT   C       ----TT     TCCC    -----   T     TTTTGTCCAATCGGATCTTGGTTTTTCGGGTTTATCAAAATCAGCCCCATTCAGATTATACAAAATTCGGTTTGGGACCGGTTCGGGTTTTATCGGGTTCGGATCAGGGATAATAAATCTTCAAAGAACCGGAACAACCCGGTGTACTTTCGGGTTTTGGGTTCCAACTGGTTCTTCGATTTTAAAATACTTAATTTATACCTATTTTGTAACCAAAACATAAGTAAAATCGATTCAGAAATAAGAAAAAAACAACAAACATGATTATTCAAAG
  CATATGT  AGG CTGGGCA      CGGAG    AATC     GAG TTCGG                                                                                                                                                                                                                                                                                  
  |||||||  ||| |||||||      |||||    ||||     ||| |||||                                                                                                                                                                                                                                                                                  T
  GTATACA  TCC GACCCGT      AGCTT    GGGT     GGC TTGGC                                                                                                                                                                                                                                                                                  
TT       --   C       TTATTT     ----    TTTTA   -     TTAGGCTAGGCTATTTTTACTTAGGTTTGGCTAGGCTTGGGCTGTATTTATGGCTTACCTACAACAAAATACCATAAAGCCCAATACCCATAATAGGCTTGGCTTGGGCTTTAATTTACCTATAGGCTATCTTGTGCTTTGTAAGTTTTACGGTTTTTTCTTGAACATGGTTTGTACTAGAGTTAAGGATACATCGGTTTTATGTCATTCTATAATGAATACTAAAGTAAATAACCAAAAGAAAGTTAGTTATTGTTGCATATGGAAAGCAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430011

CATATGTTTAGGCCTGGGCATTCGGAGTCCCAATCGAGTTTCGGTTTTGTCCAATCGGATCTTGGTTTTTCGGGTTTATCAAAATCAGCCCCATTCAGATTATACAAAATTCGGTTTGGGACCGGTTCGGGTTTTATCGGGTTCGGATCAGGGATAATAAATCTTCAAAGAACCGGAACAACCCGGTGTACTTTCGGGTTTTGGGTTCCAACTGGTTCTTCGATTTTAAAATACTTAATTTATACCTATTTTGTAACCAAAACATAAGTAAAATCGATTCAGAAATAAGAAAAAAACAACAAACATGATTATTCAAAGTCAAACGAAAGGTATACGTTGTTATTGATTGAAAGAAAACCAATAAATGAAATCATAAGTAATATCTTACTGTATTTTGGCTACATAGGAATTGAGATCATGTTTGGTACAAGTTCTTTTTTGGCATTTTGAATGTTTCGTGTTCTATCGGATATCCATTTAATTTCGGGTTCGGTTCGGATAATACCCATAACCCGAAATACCATAAAACAACATCCATTCGGTATTTATGTCGGGTTCGGATCGGTTTGGATTCATTTTTATCGGATCGGATTCGGTTCGGATTTTTGGGTTCGATTTATTTGCCCAGCCCTACATATGTT

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