SE0450012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2382
  • Brassica rapa
  • SE0450012
  • PIF/harbinger
  • To3
  • A09:21402263-21402428
  • ATA
  • GGCTTCGAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA           TTACGAACC  CCCGCCCCGCACCGCAGTTAACAGTAACAAAAATCTCTACATATACCATATATCTATACGT
   GGCTTCGAATG         GC                                                             
   |||||||||||         ||                                                              
   CCGAGGCTTAC         TG                                                             
ATA           ------CAT  ATGTCAAACTCGTTACGCCCTGTTCGCCAAATTGACGCCATGCCAAAATTGTCAATATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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