SE0430013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2383
  • Brassica rapa
  • SE0430013
  • hAT
  • Hat6
  • A03:11104225-11104416
  • TTCACTGG
  • CACTGGCAGTGGCGGAGGCAGCATGTAACTAGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  C   -               C   -----TA            AAATGACCCACATGAAAAAAAAAATTATTTGTATTTTCCTTCTAAAATTTGA
  CA TGG CAGTGGCGGAGGCAG ATG       ACTAGGGTGGTC                                                    
  || ||| ||||||||||||||| |||       ||||||||||||                                                    T
  GT ACT GTCACCGCCTCTGTC TAT       TGATCCCAGTCA                                                    
 G  C   T               C   CGAAAAG            AACTATTGTTGATATTAAATGTTCCCAGTTATCCAATCTAGAAATTGTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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