Plant MITE

SE0450016

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2386
Brassica rapa
SE0450016
PIF/harbinger
To4
A06:16856546-16856737
TTA
AGGGCATCATTATTGGTGTCCCTTAAGTTGGGTCCTTAAGTGTATGGTCCCTTAGCTTTTAACTAAAAAATCTAA

Secondary structure and sequence

TSD TIR

5'

3'

TT                         A    -              T                 C      AT    A    GGCCCTTAAATAAG
  AGGGCATCATTATTGGTGTCCCTTA GTTG GGTCCTTAAGTGTA GGTCCCTTAGCTTTTAA TAAAAA  CTAA GAGT              
  ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| ||||||  |||| ||||               
  TCCCGTAGTAATAACCACAGGGAGT CAAC CCGGGAATTTGCAT CCAGGGAATTGAAAATT ATTTTT  GATT CTCT              
AT                         C    T              C                 T      AC    -    GAAGAGAGTTCAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450016

TTAGGGCATCATTATTGGTGTCCCTTAAGTTGGGTCCTTAAGTGTATGGTCCCTTAGCTTTTAACTAAAAAATCTAAAGAGTGGCCCTTAAATAAGGGACTTGAGAGAAGTCTCTTAGCATTTTTATTTAAAAGTTAAGGGACCCTACGTTTAAGGGCCTCAACCTGAGGGACACCAATAATGATGCCCTTA

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