SE0450020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2390
  • Brassica rapa
  • SE0450020
  • PIF/harbinger
  • To1
  • A07:12526861-12527118
  • TTA
  • AGGGCATCTCCA

Secondary structure and sequence

TSD    TIR
5'



3'
TT            --TCCCT   C           C      A             T         TGAA        C  A    C  A   C          ---------------------   AT        TA
  AGGGCATCTCCA       ACT CATTTTTTCCT TAAAAT GAGTAAAAGTGAA ATGGAGTAA    TGCTCCAA CC ACTC AT TCT ACTCCATAAT                     AAA  TTACTCCA  
  ||||||||||||       ||| ||||||||||| |||||| ||||||||||||| |||||||||    |||||||| || |||| || ||| ||||||||||                     |||  ||||||||   
  TCTCGTAGAGGT       TGA GTAAAAAAGGA GTTTTA CTCATTTTCACTT TACCTCATT    ACGAGGTT GG TGAG TA AGG TGAGGTATTA                     TTT  AATGAGGT  
AT            TACATTT   A           A      C             T         -TTA        A  A    A  A   A          CCTCACTACTTGTTTGTTTTT   CT        AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End