SE0450022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2392
  • Brassica rapa
  • SE0450022
  • PIF/harbinger
  • To7
  • A07:13389740-13389954
  • TAA
  • AGGGCATGATTAATTCCGTTCTCTTAACCTGGGTTCTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G            CGT         C    -      AC   TGATTTGACACTTTTTTTTTTACAATTTTCGCTAAGAGACGGCTCTTATATCTCTTATTTAA
  AGG CATGATTAATTC   TCTCTTAAC TGGG TTCTTA  TCA                                                              
  ||| ||||||||||||   ||||||||| |||| ||||||  |||                                                               
  TCT GTACTAATTGAG   AGAGAATTG ACCT AAGAAT  GAA                                                              
AA   G            CTC         -    T      -C   GCCGATTCTTTGCCAAGAATGTAAAAGAATCTAAAATTGATTCTTTTTGATTCTTGTCAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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