Plant MITE

SE0450023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2393
Brassica rapa
SE0450023
PIF/harbinger
To7
A09:9286061-9286275
TAA
AGGGCATGATTAACTCCGGTTTCTTAACCGGAGTTCTTA

Secondary structure and sequence

TSD TIR

5'

3'

TA   G         CTC           CC      C   ----ACTC    TTTGACTTTTTTTTTTTACACTTTTTAGCTAAGAGACGGCTTTTATATTTATTAAT
  AGG CATGATTAA   CGGTTTCTTAA  GGAGTT TTA        GTGA                                                        
  ||| |||||||||   |||||||||||  |||||| |||        ||||                                                        T
  TCT GTACTAATT   GTCAGAGAATT  CCTCAA AAT        ATTC                                                        
AA   G         AAA           AA      A   CAAAACCT    TCTACCAAGAATCGAACAGAATCTAAAATTGATTCTTTTCGATTCTTGGCAGAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450023

TAAGGGCATGATTAACTCCGGTTTCTTAACCGGAGTTCTTAACTCGTGATTTGACTTTTTTTTTTTACACTTTTTAGCTAAGAGACGGCTTTTATATTTATTAATTAAGAGACGGTTCTTAGCTTTTCTTAGTTAAAATCTAAGACAAGCTAAGAACCATCTCTTATCCAAAACTAAAAACTCCAATTAAGAGACTGAAATTAATCATGGTCTAA

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