SE0450025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2395
  • Brassica rapa
  • SE0450025
  • PIF/harbinger
  • To4
  • A04:9886793-9886985
  • TAA
  • AGGGCATCATTATTGGTGTCCCTTAGCTTGAGGCCCTTAAGCGTAGGGTCCCTTAACTTTTAACTAAAAACGCTAAGGGATTTCTCTCAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                                                                                 TT    C    CC
  AGGGCATCATTATTGGTGTCCCTTAGCTTGAGGCCCTTAAGCGTAGGGTCCCTTAACTTTTAACTAAAAACGCTAAGGGAT  CTCT AAGT  
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||  C
  TCCCGTAGTAATAACCACAGGGAATCGAACTCCGGGAATTCGCATCCCAGGGAATTGAAAATTGATTTTTGCGATTCCTTG  GGGA TTTA  
AA                                                                                 CT    A    TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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