Plant MITE

SE0430026

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2396
Brassica rapa
SE0430026
hAT
Hat8
A05:8873853-8874063
TTTGATAT
CAGTGGCGGATCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

TTTGATAT          T   G AATAATTATT  CC    -------------     C      ACACTGTAATATATTTATAATTTTGAATTTTCAACCGGGGGATTATAA
        CAGTGGCGGA CTA A          GT  GAGG             CAGAA TATAAA                                                
        |||||||||| ||| |          ||  ||||             ||||| ||||||                                                 
        GTCACCGCCT GAT T          CA  CTCC             CCCCC CCCCCG                                                
TATAGTTT          T   G ----CGTACC  -T    CCCCCCCCCCCCC     -      TCGCCGGGTGGTATTTAAAATTTTAAGCACATAAAAACACGACTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430026

TTTGATATCAGTGGCGGATCTAGAAATAATTATTGTCCGAGGCAGAACTATAAAACACTGTAATATATTTATAATTTTGAATTTTCAACCGGGGGATTATAAAAAATCAGCACAAAAATACACGAATTTTAAAATTTATGGTGGGCCGCTGCCCCCCCCCCCCCCCCCCCCCCCCCTCTACCCATGCTGTAGTTCCGCCACTGTTTGATAT

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