Plant MITE

SE0430031

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2401
Brassica rapa
SE0430031
hAT
Hat10
A06:16810852-16811025
TGTATAAC
TGTATAACCAGAGGCGGATCCAG

Secondary structure and sequence

TSD TIR

5'

3'

        AC   A        C  ----     AAG    TGTGGCACAGACCCCACACTCATTTTTATTTTTTTCTTTAGTAACTAATT
  TGTATA  CAG GGCGGATC AG    GTGAG   GGGG                                                  
  ||||||  ||| |||||||| ||    |||||   ||||                                                   
  ATATGT  GTC CCGCCTGG TC    AATGT   ATAC                                                  
CA      --   C        C  TTGA     ATT    TGCATGTGTCACATTAAATATATATCCAATCTCTACACAATTATTTAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430031

TGTATAACCAGAGGCGGATCCAGGTGAGAAGGGGGTGTGGCACAGACCCCACACTCATTTTTATTTTTTTCTTTAGTAACTAATTTAAATTTATTAACACATCTCTAACCTATATATAAATTACACTGTGTACGTCATATTATGTAAAGTTCTCGGTCCGCCCCTGTGTATAAC

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