Plant MITE

SE0450032

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2402
Brassica rapa
SE0450032
PIF/harbinger
To6
A03:9390253-9390571
TAA
AGACCATCTCCAAGGGCACTCTATTTTTTCCTCTATAATTTACACAAAAATAGAGTAACTCTATTATAGTGTAACTTTTACTCCAATGGTGTTACTCTATAATAGAATTACTCTATTATAGAGTGAAATATAGAGGAATGTCATATTTTACTCTA

Secondary structure and sequence

TSD TIR

5'

3'

TA   C         G GC                                                              A                          A                                     -A          TA
  AGA CATCTCCAA G  ACTCTATTTTTTCCTCTATAATTTACACAAAAATAGAGTAACTCTATTATAGTGTAACTTTT CTCCAATGGTGTTACTCTATAATAGA TTACTCTATTATAGAGTGAAATATAGAGGAATGTCAT  TTTTACTCTA  
  ||| ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||   
  TCT GTAGAGGTT C  TGAGATAAAAAAGGAGATATTAAATGTGTTTTTATCTCATTGAGATAATATCACATTGAAAA GAGGTTACCACAATGAGATATTATCT AATGAGGTAATATCTCACTTTATATCTCCTTACAGTG  AAAGTGAGGT  
AA   C         A AT                                                              C                          C                                     AA          TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450032

TAAGACCATCTCCAAGGGCACTCTATTTTTTCCTCTATAATTTACACAAAAATAGAGTAACTCTATTATAGTGTAACTTTTACTCCAATGGTGTTACTCTATAATAGAATTACTCTATTATAGAGTGAAATATAGAGGAATGTCATATTTTACTCTATATTTGGAGTGAAAAAGTGACATTCCTCTATATTTCACTCTATAATGGAGTAACTCTATTATAGAGTAACACCATTGGAGCAAAAGTTACACTATAATAGAGTTACTCTATTTTTGTGTAAATTATAGAGGAAAAAATAGAGTTACATTGGAGATGCTCTAA

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