Plant MITE

SE0450033

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2403
Brassica rapa
SE0450033
PIF/harbinger
To6
A05:4542965-4543283
TTA
AGACCATCTCCAATGGGATTCTATTTTTTCTTCTGTAATTTATGCTAAAATAGAGTAAATCTATTATAATGTAACTTTTGCTTAAATAGTGTTACTCTATAATAGAATTACTCTATTATAGAGTGAAATATAGAGAGATGTCACTTTTTCACTCTA

Secondary structure and sequence

TSD TIR

5'

3'

TT   C            G                                         A         A              A   A                  A                         G  A       CT    C      AA
  AGA CATCTCCAATGG ATTCTATTTTTTCTTCTGTAATTTATGCTAAAATAGAGTAA TCTATTATA TGTAACTTTTGCTT AAT GTGTTACTCTATAATAGA TTACTCTATTATAGAGTGAAATATA AG GATGTCA  TTTT ACTCTA  
  ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||||  |||| ||||||   
  TCT GTAGAGGTTATC TGAGATAAAAAAGGAGATATTAAATGTGATTTTATCTCATT AGATAATAT ATATTGAAAACGAG TTA TACAATGAGATATTATCT AATGAGATAATATTTCATTTTATAT TC TTACAGT  AAAA TGAGAT  
AT   C            A                                         A         A              G   C                  C                         A  C       AT    -      AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450033

TTAGACCATCTCCAATGGGATTCTATTTTTTCTTCTGTAATTTATGCTAAAATAGAGTAAATCTATTATAATGTAACTTTTGCTTAAATAGTGTTACTCTATAATAGAATTACTCTATTATAGAGTGAAATATAGAGAGATGTCACTTTTTCACTCTAAATATAGAGTAAAATATGACATTCCTATATATTTTACTTTATAATAGAGTAACTCTATTATAGAGTAACATCATTGGAGCAAAAGTTATAATATAATAGAATTACTCTATTTTAGTGTAAATTATAGAGGAAAAAATAGAGTACTATTGGAGATGCTCTTA

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