Plant MITE

SE0450035

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2405
Brassica rapa
SE0450035
PIF/harbinger
To10
A05:21563145-21563755
TTA
AGAGCATGTTTATCGGCGTCGCTTAGGAGGGTTGTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT             --CG   -  G     GA    T     --------------    AATTGGCAATTAAAATAAAAGGAAAATAGACAATTAAACAAAGGACGTCGCCTAATTTGGGTCTCGAAGGCACGTTGCTTAGCGGGTACGTGGCACAATCAGGTTGGCTGGAGGAGCAGTGTCGTCTTTCGTCTTTTTTCTTTTTCTTCTCTCGGTGGCGAAACAGGGAGTCCTCGACACCTCGACGACTCCTCGACGCCATGAAGCCGCTCTGCATCTCGAGATTGGAGACCATGGTTGGTTGTTTCTCCCCT
  AGAGCATGTTTAT    GCG TC CTTAG  GGGT GTTTA              GCTA                                                                                                                                                                                                                                                              
  |||||||||||||    ||| || |||||  |||| |||||              ||||                                                                                                                                                                                                                                                               
  TCTCGTACAAATA    CGT AG GAATC  CCCA CGAAT              TAAT                                                                                                                                                                                                                                                              
AT             ACCA   T  A     -A    -     TACTTAAAAATTTA    TTTAACACTACCCCAGTTTTTCTTTTCTTGGTTTGATACTCCTGACCTACACGTTTTATCGGTTTTCATCGGTAACTACAAAGTGCTCAGAAAGCTTACGCTGCCGCTTGAACTAAGGTTGCTACTCGTCGTGCTGCCTCTACTTGACTGCTACAGCTTTGACTCCACCTCCTCTCGACTGCTGCGGCTACTAAGTCCCTGACACGTCACCTCCTCTCGACTCTGCAACCCCTAACTACTAACCTCGTAGCCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450035

TTAGAGCATGTTTATCGGCGTCGCTTAGGAGGGTTGTTTAGCTAAATTGGCAATTAAAATAAAAGGAAAATAGACAATTAAACAAAGGACGTCGCCTAATTTGGGTCTCGAAGGCACGTTGCTTAGCGGGTACGTGGCACAATCAGGTTGGCTGGAGGAGCAGTGTCGTCTTTCGTCTTTTTTCTTTTTCTTCTCTCGGTGGCGAAACAGGGAGTCCTCGACACCTCGACGACTCCTCGACGCCATGAAGCCGCTCTGCATCTCGAGATTGGAGACCATGGTTGGTTGTTTCTCCCCTCTCCGATGCTCCAATCATCAATCCCCAACGTCTCAGCTCTCCTCCACTGCACAGTCCCTGAATCATCGGCGTCGTCAGCTCTCCTCCACCTCAGTTTCGACATCGTCAGTTCATCTCCGTCGTGCTGCTCATCGTTGGAATCAAGTTCGCCGTCGCATTCGAAAGACTCGTGAAACATCAATGGCTACTTTTGGCTATTTTGCACATCCAGTCCTCATAGTTTGGTTCTTTTCTTTTTGACCCCATCACAATTTTAATATTTAAAAATTCATTAAGCACCCACTAAGAGATTGCACCAATAAACATGCTCTTA

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