SE0420036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2406
  • Brassica rapa
  • SE0420036
  • Mutator
  • M2
  • A10:933411-934008
  • GTAGTGGTT
  • GGGTGAACGATCTATTTCCCCACGAGAACTATCGTATAGCATCAGATCCCCACCAAACTATGACCTCGTGCTAAAACTCCATGAATTTAAAGTTGTAAACTTATTTCTCTCCAAATTATAAGTTGTAAATTGATTTCTCCCCAAACCGATATTTCAAAACGTAATTGTCCATATACCATGGTTTTAATCGGTTAACCGACCAATTAAACCAATAAAAATCT

Secondary structure and sequence

TSD    TIR
5'



3'
GTAGTGGTT                                                C   C                 C                         A                                                C G   T        G            T                  -------     G      --     C   A       CAAAC    TTTTATTAAAAAAAAAGCGATTCACAAAAAAAAAAAGTGATTCCCAGAATTTTTTA
         GGGTGAACGATCTATTTCCCCACGAGAACTATCGTATAGCATCAGATC CCA CAAACTATGACCTCGTG TAAAACTCCATGAATTTAAAGTTGT AACTTATTTCTCTCCAAATTATAAGTTGTAAATTGATTTCTCCCCAAA C ATA TTCAAAAC TAATTGTCCATA ACCATGGTTTTAATCGGT       TAACC ACCAAT  TAAAC AAT AAAATCT     TAAT                                                        
         |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||| ||||||||||||||||||       ||||| ||||||  ||||| ||| |||||||     ||||                                                         
         CCCACTTGCTAGATAAAGGGGTGCTCTTGATAGCATATCGTAGTCTAG GGT GTTTGATACTGGAGCAC ATTTTGAGGTACTTAAATTTCAACA TTGAATAAAGAGAGGTTTAATATTCAACATTTAACTAAAGAGGGGTTT G TAT AAGTTTTG ATTAACAGGTAT TGGTACCAAAATTAGCCA       ATTGG TGGTTA  ATTTG TTA TTTTGGA     TTTT                                                        
TTGGTGATG                                                A   A                 A                         G                                                A A   C        A            C                  AATGATA     A      AA     A   A       -AAAA    TTTTGACTAAGTAATTTTTTAACTTAATTTTAACGGTTTTTTTAAACAAACAGATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End