Plant MITE

SE0450042

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2412
Brassica rapa
SE0450042
PIF/harbinger
To13
A01:2671160-2671571
TAA
AGGGGGTGTTAGTGGGGGTGAGATTTATAATGAGT

Secondary structure and sequence

TSD TIR

5'

3'

TA                 G G         AT          ATTTCTAAGTCTAGTGTTATTGGTTTATAGATTCTCTTATTCTCATTAAAATCTATTGTTATTGGTTTGATGATTCTATAACTCTATACAAAATCATTTATTATTCAAAAAGTTTAGATTTTAATGATTCTACAAATCTATTAAAGTAAGTGTTATTGAGAAT
  AGGGGGTGTTAGTGGGG T AGATTTATA  GAGTCTTAGA                                                                                                                                                                   
  ||||||||||||||||| | |||||||||  ||||||||||                                                                                                                                                                    
  TCCCCCACAATCACCCT A TTTAAATAT  CTCAAATAAC                                                                                                                                                                   
AA                 G A         AT          TAAAATTTTCAACTCTCTAAACAATTTAAACCTTTCTCTACATCTCTTAAAACATATAACACTTTTAGATACTTTTATTTCATTACATTACTAAGATTCTTAAGTTCCATTTGTACATCATAAGAGTTTTAGAATTAAACACTCAATTTTACTATTCTTAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450042

TAAGGGGGTGTTAGTGGGGGTGAGATTTATAATGAGTCTTAGAATTTCTAAGTCTAGTGTTATTGGTTTATAGATTCTCTTATTCTCATTAAAATCTATTGTTATTGGTTTGATGATTCTATAACTCTATACAAAATCATTTATTATTCAAAAAGTTTAGATTTTAATGATTCTACAAATCTATTAAAGTAAGTGTTATTGAGAATTGAATTCTTATCATTTTAACTCACAAATTAAGATTTTGAGAATACTACATGTTTACCTTGAATTCTTAGAATCATTACATTACTTTATTTTCATAGATTTTCACAATATACAAAATTCTCTACATCTCTTTCCAAATTTAACAAATCTCTCAACTTTTAAAATCAATAAACTCTATATAAATTTAAGTCCCACTAACACCCCCTAA

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