SE0410045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2415
  • Brassica rapa
  • SE0410045
  • Tc1/Mariner
  • St3
  • A04:1716800-1717053
  • TA
  • TACTTCCTCCGTTTTTTTATATATGACGTTTTAGAATTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                  -                 --------A    GCACA       --A  AACA        -   AACAA    ATCATTAGTTGTTTACATAACCACAATTTAACCAATAATAAAATA
TACTTCCTCCGTTTTTTT ATATATGACGTTTTAGA         TTGT     TAGATTA   GA    TTTAATTT CTA     AAAC                                             
|||||||||||||||||| |||||||||||||||||         ||||     |||||||   ||    |||||||| |||     ||||                                             G
ATGAGGGAGGCAAAAAAA TATATACTGCAAAATCT         AACA     GTTTAAT   CT    AAGTTAAA GAT     CATT                                             
                  A                 CTTTAAAAA    ---AG       AAA  GCAA        A   ----A    TTAAATAATGATTAATTACAATCTACTGGTTACTATAATATTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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