Plant MITE

SE0410046

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2416
Brassica rapa
SE0410046
Tc1/Mariner
St2
A09:20762596-20762857
TA
TACTCCCTCCGTTCCTAAATGATCCATGTTTTAGAA

Secondary structure and sequence

TSD TIR

5'

3'

         C              C           AAATATTT  TT   AAAAGATCCATATTTTACATTTTCAATGTATGTAATAATAGAAAATTGTAAATTTCAAAAACATTAATTGTGTTTACTGAATT
TACTCCCTC GTTCCTAAATGATC ATGTTTTAGAA        TG  TCT                                                                                   
||||||||| |||||||||||||| |||||||||||        ||  |||                                                                                    
ATGAGGGAG CAAGGATTTATTAG TACAAAATCTT        GT  GTG                                                                                   
         A              A           ----AAAA  --   AATAATTCTTTTGTGAATTTTAAAACTATTATTTACATACTAAAAGACACAAATCGATAAAGGATACTAAAAATTGGTTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410046

TACTCCCTCCGTTCCTAAATGATCCATGTTTTAGAAAAATATTTTGTTTCTAAAAGATCCATATTTTACATTTTCAATGTATGTAATAATAGAAAATTGTAAATTTCAAAAACATTAATTGTGTTTACTGAATTTTAATTGGTTAAAAATCATAGGAAATAGCTAAACACAGAAAATCATACATTTATTATCAAAATTTTAAGTGTTTTCTTAATAAGTGTGAAAATTCTAAAACATAGATTATTTAGGAACAGAGGGAGTA

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