SE0430047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2417
  • Brassica rapa
  • SE0430047
  • hAT
  • Hat16
  • A01:20995885-20996279
  • GTCTCAGT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
G       TAGTGCTGGGAATATGAATCATTATCCGCGGGCCCCGCCCTATTTGACCCGCTGCGGGGCGGATGCAGATCGAGTGATTTGAAAAATTTGGTTAGCGGGTGCGGGTGCGGGTTGAGTGATTTTTATGTGGGGCGGATGCGGATCAGCCAAAATTCAGTGCGGGTATCCGGCAACCCGCAAAAACTTTTT
 TCTCAGT                                                                                                                                                                                             
 |||||||                                                                                                                                                                                             A
 GACTCTG                                                                                                                                                                                             
T       ATCTCGACCCAACGCCCAGTTTGGGCGGGGCGACTGGGCGGTTGGGCGCCTATTTGACTAAAAAAAATGAGTTTTTTAAACTGGGCGAACTGGGCGTTCTTCTTTTATTCTTCGGGCGGGGGCGGGGTTTATAAAAAATAATTTTTATTATTTATAATTAGATAAATATTAATTTTAATTTAATAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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