SE0430050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2420
  • Brassica rapa
  • SE0430050
  • hAT
  • Hat17
  • A09:10859475-10859657
  • TATATACC
  • TATATACCCAGGGGCGGATGCAGGACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
         CC               A   ---   ATAGATGGGGGCTCATGATTTTTTTAGCTTATGCATAATTTTCTAAGTAGAAACAACCT
  TATATAC  AGGGGCGGATGCAGG CTA   CAT                                                           
  |||||||  ||||||||||||||| |||   |||                                                            
  ATATATG  TCCCCGCCTGCGTTC GAT   CAT                                                           
CC       --               C   TGC   GCCCCAGTACACGGGGGATGACTAAAAAATAAAAGAACATCATTAATCATATTTAGACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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