SE0410051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2421
  • Brassica rapa
  • SE0410051
  • Tc1/Mariner
  • St6
  • A01:3901070-3901312
  • TA
  • TACTCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
         -------CGT     AA   GTATCGTTGGAGAGAATTTTTTTCGTTACAAAATAAGTGTCGTTTTCGATTTTCAATTCAAAATTTATTAGTTTTATTCAGTAATTTATTTTTCTAT
TACTCCCTC          TTCTC  TAA                                                                                                 
|||||||||          |||||  |||                                                                                                  
ATGAGGGAG          ATTCA  CAG                                                                                                 
         AAAAAATATA     --   TAAAACCCAGACACGTGTGCCTAATTCCTTTGTTAATTAAAACATCTAAAGGATATATTTTTGTGTTAATGGTTATATGAATTGGTATAAAGTTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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