SE0430053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2423
  • Brassica rapa
  • SE0430053
  • hAT
  • Hat4
  • A03:2668709-2668901
  • CTCTGGTT
  • CTGGTTCAGTGGCGGAGCCAGTGTGCTATGAGGGGTGTCAATTGACCCATGT

Secondary structure and sequence

TSD    TIR
5'



3'
CT    TT           C   T  GC   ----      TG     ----    CC    CAAT        -AAA   ------         T TA     A
  CTGG  CAGTGGCGGAG CAG GT  TAT    GAGGGG  TCAAT    TGAC  ATGT    TTTTGCAA    CAA      AAATTTACT G  TTTTC 
  ||||  ||||||||||| ||| ||  |||    ||||||  |||||    ||||  ||||    ||||||||    |||      ||||||||| |  ||||| A
  GGTC  GTCACCGCCTC GTT TA  ATA    CTCCCC  AGTTA    ATTG  TACA    AAAACGTT    GTT      TTTAAGTGG C  AAAAG 
TT    TC           C   T  AA   AAAT      --     TACT    TT    ---T        CCCA   ATCCGA         T TA     A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End