SE0450056

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2426
  • Brassica rapa
  • SE0450056
  • PIF/harbinger
  • To17
  • A03:25152756-25153134
  • TAA
  • AGGGGGTGTATTCAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA               CTGATA    T    A    ATATTAA    -ATAAATCTAC       ---          -   ---   -- AACTCATTTAAAATTCACTGTTATTGAACTTAACATTTCGTGAAGTACTATAAAATCCATTGTTATTGAAAAGATTTTAAGTTGTGGAGTTTTAAAGTTTTC
  AGGGGGTGTATTCAA      ATTT AGGT ATTT       AATG           TGTTATT   CAAACATGAA TTT   TAA  A                                                                                                      
  |||||||||||||||      |||| |||| ||||       ||||           |||||||   |||||||||| |||   |||  |                                                                                                      A
  TCCCCCACATAAGTT      TAAA TCCA TAAA       TTAC           CTAAAGT   TCAACGTCTC AAA   AAA  T                                                                                                      
AA               ATATCG    T    C    CTAAAAA    CTTAAAATTTA       TAT          T   AAA   TT CCACTAAAAACAATTTGATGAGATCTTATAGTGGATTTTAGTACTTTAAACCCAAAATTAATAAAATTAATTTTTTGAGGTGGGTTTGTGGGATTTTAGTGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End