Plant MITE

SE0410059

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2429
Brassica rapa
SE0410059
Tc1/Mariner
St8
A10:8018083-8018346
TA
TATTCCCTCTGTTTCATAATAAATGTCATTTTAATATTTT

Secondary structure and sequence

TSD TIR

5'

3'

      C        AT     A         A       TTTCTT  T   AAAAAAATGTCACTTTACAATTTCAATGCAAATTATACTTACTTTCAGCTGAAATTTAATTGAAAACTGCATTGATTTTATAA
TATTCC TCTGTTTC  AATAA TGTCATTTT ATATTTT      GT ACA                                                                                   
|||||| ||||||||  ||||| ||||||||| |||||||      || |||                                                                                   A
ATGAGG AGGCAAAG  TTATT ACAGTAAAA TGTAAAA      AG TGT                                                                                   
      A        AC     C         C       ------  -   GTATAATTCTTTTACTGTCTTTATATACATTCAATAATAATTAATATGAAAGACTGGTTATCATAAACTCTATTTATTTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410059

TATTCCCTCTGTTTCATAATAAATGTCATTTTAATATTTTTTTCTTGTTACAAAAAAAATGTCACTTTACAATTTCAATGCAAATTATACTTACTTTCAGCTGAAATTTAATTGAAAACTGCATTGATTTTATAAATAATTTTATTTATCTCAAATACTATTGGTCAGAAAGTATAATTAATAATAACTTACATATATTTCTGTCATTTTCTTAATATGTGTGAAAAATGTCAAAATGACACTTATTCAGAAACGGAAGGAGTA

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