SE0450060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2430
  • Brassica rapa
  • SE0450060
  • PIF/harbinger
  • To18
  • A09:31835952-31836219
  • TAA
  • AGACCATCTCCAATGTATTTTGCCATTTTCACCTCTAAAATAGGG

Secondary structure and sequence

TSD    TIR
5'



3'
TA   C          G   TT   C             A     G GAACTCTATAAC        T  A         --         TAAAATAGCACTCTCTAAAATACAGAGTTAAAAATAGAGGAATGCTATTT
  AGA CATCTCCAAT TAT  TGC ATTTTCACCTCTA AATAG G            AGAGGTGA AT TGCTCCAAT  GTATTCCTT                                                  
  ||| |||||||||| |||  ||| ||||||||||||| ||||| |            |||||||| || |||||||||  |||||||||                                                   
  TCT GTAGAGGTTG GTA  ACG TAAAAGTGGAGAT TTATC T            TCTCCACT TA ACGAGGTTG  TGGAGATAA                                                  
AA   C          G   --   A             A     G ---------AAA        T  -         GG         AGAAGGAAAGATTATCTCTAGAGATAAAAAAGGAGATAAATATCTCCTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End