SE0430064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2434
  • Brassica rapa
  • SE0430064
  • hAT
  • Hat14
  • A09:1596258-1596775
  • TTAAAAGT
  • TAGGGGTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAGT           ACTTTACCC      -  AAGTGGCACCCAAACCCGATCCGAAAAACCCGAACCGAAATCCGAACCGAAGTAGCAAAATACCCGAACGGGTATTGAATAATGAAAGATTGGATACCCGAACCCGAACGGATAATACCCGAACCCGAATGGATATCCGAAGATAACCGAACATATGTATAATTAACCTTATTTTTAGTTTTAAAATGTTATGTCCAAATCTATTAACCATTCAATCTATTAA
        TAGGGGTGGGC         GATATC CG                                                                                                                                                                                                                               
        |||||||||||         |||||| ||                                                                                                                                                                                                                               A
        ATCCCCACCCG         ATGGGC AG                                                                                                                                                                                                                               
TGAAAATT           --CAAGCCC      A  CCCAAGCCTAGCCCATAAAGCCTAAAAGCCCATAAAGCCATATCTCCAGATCTTAGGCAAGCCCATAAAGACATGAAGCCCAGCCCAAGCCCATAAAAATCAAGCCTAAGCCAATTAAGCCTAGCCCAAGCCTATAAATCTAAAACTTTTTTTTTTAATTTTAAAAGTAAAGAGTTCAAATAACATAAATTTTTATATTGAAAATCAATTGATTAAAAAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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