Plant MITE

SE0430065

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2435
Brassica rapa
SE0430065
hAT
Hat21
A08:13754014-13754278
CTTGAGCA
CTTGAGCACAGTGGCGGACCCAT

Secondary structure and sequence

TSD TIR

5'

3'

          CA T      C    AATA   TTT          ACTAA      TTGGCCCAAATTAAAACTGAAATAAAGAGAAAAAACCTGACAAAGAAGTTTGAACCCAAGTTTCTAAGTTAAAGGGTTGTCA
  CTTGAGCA  G GGCGGA CCAT    GGT   AAGGGGTGTC     TTGGGC                                                                                  
  ||||||||  | |||||| ||||    |||   ||||||||||     ||||||                                                                                   
  GAGTTCGT  C CCGCCT GGTG    CCA   TTCCCTACAG     TGGACT                                                                                  
AC        -- T      A    CAAC   --T          -----      GTGTCCAATTTAAATATATGGTCGTTCAAACATAGTTCATTGCCTTTTTATGTATCGAGTCAATCACATAAATGAGAGGAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430065

CTTGAGCACAGTGGCGGACCCATAATAGGTTTTAAGGGGTGTCACTAATTGGGCTTGGCCCAAATTAAAACTGAAATAAAGAGAAAAAACCTGACAAAGAAGTTTGAACCCAAGTTTCTAAGTTAAAGGGTTGTCAAGAGGAGAGTAAATACACTAACTGAGCTATGTATTTTTCCGTTACTTGATACAAACTTGCTGGTATATAAATTTAACCTGTGTCAGGTGACATCCCTTTACCCAACGTGGATCCGCCTCTGCTTGAGCA

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