SE0450071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2441
  • Brassica rapa
  • SE0450071
  • PIF/harbinger
  • To19
  • A02:11764441-11764793
  • TAA
  • GGGGGTGTTATTCAATCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA   -               C      T     AGTTATTAATGTTTTATAATCTTTCAAATTTTAAAGTTTTAAGTTGATGAATTCTAAAATCTCTGTAGTAGACCTCAGATTTTGAATTCATTCATTTGTTCATAAAAATCTATAAGAGATGATTTGAAATCAATTTAAAATAC
   GGG GGTGTTATTCAATCA TGATTT AAATC                                                                                                                                               
   ||| ||||||||||||||| |||||| |||||                                                                                                                                               A
   TCC CCACAATAAGTTAGT ACATAA AATTA                                                                                                                                               
 AA   A               -      -     TCTCAAATTTAGTTTTGTGTTAGATGACAATAAGTTTACTACTAAGATTTAAGATAAAATTTTAGATCACAATAAGTCACTTACTAAATTTAGGTCGAAAATTTTAGATCACAATAAGTTGAAAGTTCATAAAATTTCAAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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