SE0430072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2442
  • Brassica rapa
  • SE0430072
  • hAT
  • Hat24
  • A01:2556678-2557083
  • GTCTCAAC
  • GGTGTTTTTAAAACCGGACGGAAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCTCAACA                   G  AG C       ATAATTTTTAGATCACAATTTAATATGGTTCGACCGGATCAAATCTGGTTCAATAATCTGGATTAATATATTTCTAATGTATAAATTTAAAATTAATGTTAGTTAATATGATACATAATTAAAATATAAATGAATTTAAAACATAAACATTGTAAATAAAA
         GGTGTTTTTAAAACCGGAC GA  C GAACCGG                                                                                                                                                                 
         ||||||||||||||||||| ||  | |||||||                                                                                                                                                                  
         TCACAAAAATTTTGGCCTG CT  G TACCAAC                                                                                                                                                                 
CAACTCTGA                   G  GA C       CAAGTTGGTACTTGGCCTATGTATCGGCCTAAACCAGATTATTAACCAAGCTGGTACTTGGCAATGCATTGGTCTAACCTAAAGTCTCAATAATGACTAATTTTGGTAAATTTTGATAGTTTTTAGAAATTTTTTAATTAGGTATATTTGTATTTTGATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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