SE0450073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2443
  • Brassica rapa
  • SE0450073
  • PIF/harbinger
  • To20
  • A02:22746026-22746284
  • TTA
  • AGGGTGTAACTGGTGATCAAGGAATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     G           -------------CA        --------AA     TAATGCATTTTTTATTTTTCCTAATTTTTTTTACTATTTACAAGGAATTATTTTTCTTTTGCATTCCTTCTCATTCTTTTTAT
  AGGGT TAACTGGTGAT               AGGAATGA          GAGAA                                                                                   
  ||||| |||||||||||               ||||||||          |||||                                                                                    
  TCCCA ATTGACCACTG               TCCTTACT          TTATG                                                                                   
AT     G           ATAATATCCTTATAA        CATCCCTTTT     TCTCCTTATTATAATCTTCTTATTTTTCCTTTTACTAAAGAATAGTTAAAATCATCCTTGTTTAAACAGATATAAGGAGATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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