Plant MITE

SE0410075

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2445
Brassica rapa
SE0410075
Tc1/Mariner
St10
A07:13053863-13054085
TA
TACTCCCTCCGTTCTGTTTTAACTGACGTTTTACAATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C      T     C                  GTTTTGTCTCCAT     - GTCGTTTCCAAAAGTGACTTGTTTTACCCTTATACTTGTGAGTTGTCGTAATAA
TACTCCCTC GTTCTG TTTAA TGACGTTTTACAATTTTT             TTACT T                                                      
||||||||| |||||| ||||| ||||||||||||||||||             ||||| |                                                      T
ATGAGGGAG CAAGAT AAATT ACTGCGAAATGTTGAAAA             ATAAA C                                                      
         A      T     T                  -------GTGTGT     T CGTCGATTGGTTTATGGATAAGATTGGAAAAATATATACTTGATTGAGATTTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410075

TACTCCCTCCGTTCTGTTTTAACTGACGTTTTACAATTTTTGTTTTGTCTCCATTTACTTGTCGTTTCCAAAAGTGACTTGTTTTACCCTTATACTTGTGAGTTGTCGTAATAATGATTTAGAGTTAGTTCATATATAAAAAGGTTAGAATAGGTATTTGGTTAGCTGCCTAAATATGTGTGAAAAGTTGTAAAGCGTCATTTAAATTAGAACAGAGGGAGTA

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