Plant MITE

SE0410077

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2447
Brassica rapa
SE0410077
Tc1/Mariner
St11
A02:8110494-8110756
TA
TACTCCCTATGTATCATTTTAAGAGGTGTTTAAGGTTTTTG

Secondary structure and sequence

TSD TIR

5'

3'

        A       T     GA           T     CACATAT    A  AAATACAAACTTTTATGTATTTGGTTTTGGTTACATAAAATAACATTAAATAAAACTAATTCAACCAATAAGAAAAAGAT
TACTCCCT TGTATCA TTTAA  GGTGTTTAAGG TTTTG       ATTA GA                                                                                
|||||||| ||||||| |||||  ||||||||||| |||||       |||| ||                                                                                A
ATGAGGGA ACATAGT AAATT  TCACAAATTCC AAAAC       TAAA AC                                                                                
        G       C     GA           T     -------    -  AAAGTTTTATTCACTACAAAAGTGTTAAAATCCACTTTAAATTACAGTAAATTTTTAAAACTGGTTAATATTTTTATGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410077

TACTCCCTATGTATCATTTTAAGAGGTGTTTAAGGTTTTTGCACATATATTAAGAAAATACAAACTTTTATGTATTTGGTTTTGGTTACATAAAATAACATTAAATAAAACTAATTCAACCAATAAGAAAAAGATATAGTATTTTTATAATTGGTCAAAATTTTTAAATGACATTAAATTTCACCTAAAATTGTGAAAACATCACTTATTTTGAAACAAAATCAAAATCCTTAAACACTAGTTAAACTGATACAGAGGGAGTA

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