Plant MITE

SE0450079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2449
Brassica rapa
SE0450079
PIF/harbinger
To18
Scaffold001759:152-684
TAA
AGAGCATCTCCAA

Secondary structure and sequence

TSD TIR

5'

3'

TA   G         CCCCA   T     C   -     ATGCTATAATAGAGGTAAAAGTGCTCCATCCCATCTCTATTTTCACCTCTAAAATAGAGATTGCTATTTTTTCCTCTATTTATAGAGGAAAAAATAGCATTCCTCTATTATAGAGTCATACTTTTTTATTTTCAAAATAGTCCTTTAACTTTCAAATTCTTATAGTTGTAACCAAAATAATTATATTTATAGAGAAATACAACTTTTGTAGGAGTATAATAACATTTTT
  AGA CATCTCCAA     AGC ATTTT ACC TCTAT                                                                                                                                                                                                                                     
  ||| |||||||||     ||| ||||| ||| |||||                                                                                                                                                                                                                                      
  TCT GTAGAGGTT     AGG GGATA AAA TGGAG                                                                                                                                                                                                                                     
AA   G         ACATA   -     -   A     ATTTTATCTCGTGGAGATTTTATCTCTACTCAAAGAGAGGTTACATAAAGAGATAAAAACGGAGATATTTCCTTATAAGAGTTTTCTAAGATAAAATTAAAATGTTTTCTATGTAAAACAAATATTTTTAACTATTGATTGGGATAAATACAAATTGAAAATTTTGTAAAAGTATTTGAATACTTAAAAAAATTTGATTTCAAAACAATTTTTTTGATAATACATTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450079

TAAGAGCATCTCCAACCCCAAGCTATTTTCACCTCTATATGCTATAATAGAGGTAAAAGTGCTCCATCCCATCTCTATTTTCACCTCTAAAATAGAGATTGCTATTTTTTCCTCTATTTATAGAGGAAAAAATAGCATTCCTCTATTATAGAGTCATACTTTTTTATTTTCAAAATAGTCCTTTAACTTTCAAATTCTTATAGTTGTAACCAAAATAATTATATTTATAGAGAAATACAACTTTTGTAGGAGTATAATAACATTTTTTATTTACATAATAGTTTTTTTAACAAAACTTTAGTTTAAAAAAATTCATAAGTTTATGAAAATGTTTTAAAAGTTAAACATAAATAGGGTTAGTTATCAATTTTTATAAACAAAATGTATCTTTTGTAAAATTAAAATAGAATCTTTTGAGAATATTCCTTTATAGAGGCAAAAATAGAGAAATACATTGGAGAGAAACTCATCTCTATTTTAGAGGTGCTCTATTTTAGAGGTAAAAATAGGGGAATACATTGGAGATGGTCTAA

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