SE0450081

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2451
  • Brassica rapa
  • SE0450081
  • PIF/harbinger
  • To3
  • A09:35022293-35022458
  • TAA
  • AGGCTTCGAATGGTGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C          CATC  TCCGCTCCGCCCCGCAGTTAACAATAACAAAAATCTTTACGTATACTATATATCTATAT
  AGGCTT GAATGGTGAC    GT                                                           
  |||||| ||||||||||    ||                                                           A
  TCCGAG CTTACCACTG    CG                                                           
AA      A          ---A  CCAAACTCGCCACGCCTTGTTCGCCAAGTTGACGCCACGCCAAGATTGTCAATATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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