SE0430086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2456
  • Brassica rapa
  • SE0430086
  • hAT
  • Hat15
  • A07:8434743-8434995
  • GTCATTTT
  • TCAGGGCCGGGTCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCATTT               -----      -- TT    CACAAGCAAAAAGATACTTTTGGCTCTTTTGTTTCTAAAAACAGTAAAAATATTAAAAGTTGTGGCTGAGAAGACTTGAACTCGGGTCC
       TCAGGGCCGGGTCTG     GAAAAT  A  GGCC                                                                                         
       |||||||||||||||     ||||||  |  ||||                                                                                          
       GGTCCCGGCCCGGAC     TTCGGG  G  TTCG                                                                                         
TTTTACT               TTATC      TA --    TACACGAACCCCGGACTGCTTTTATCCCCGGTTCATATTAGTATTTTTCGTACATCGAGATAACCATTGTAACAATATAAATACCCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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