SE0450090

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2460
  • Brassica rapa
  • SE0450090
  • PIF/harbinger
  • To2
  • A01:1484718-1484936
  • TAA
  • AGAGCATCTCCAAAGGCACTCTATTTTTTCCTCTATAATTTACACTAAAATAGAGTAACTCTATTATAGAGTTGAATTTGCTCCAATGGTTCACTCTATAATAGAGTTACTCTATTATAGAGTGAACCATTGGAGCAAATTCAACTCTATAATAGAGTTACTCTATTTTAGAGTGAAATATAGAGGAAATTATAGAGTGTGATTGGAGATGGTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G         AG         TT           A     A                                                              T
  AGA CATCTCCAA  GCACTCTAT  TTTCCTCTATA TTTAC CTAAAATAGAGTAACTCTATTATAGAGTTGAATTTGCTCCAATGGTTCACTCTATAATAGAG 
  ||| |||||||||  |||||||||  ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| T
  TCT GTAGAGGTT  TGTGAGATA  AAAGGAGATAT AAGTG GATTTTATCTCATTGAGATAATATCTCAACTTAAACGAGGTTACCAAGTGAGATATTATCTC 
AA   G         AG         TT           A     A                                                              A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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