SE0450092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2462
  • Brassica rapa
  • SE0450092
  • PIF/harbinger
  • To5
  • A05:15280084-15280296
  • TAA
  • AGAGCATGATTAATGAGAGGTTTTTAAAGTGGAGTTTTTAGCGGAATATAAGAAACCGTCTCTTAACTTTTAACTAAAAAATTTCAGAACCGGCTCTTAAATAAGATATTTAAGAACCGGTTCTTAGCTTTTTTAGTTAAAAGTTAAGAGACAGTTTCTTATATTCCGTTAAAAATCTCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               A         -AAA    A                       C                        T  C        C         A
  AGAGCATGATTAATG GAGGTTTTT    GTGG GTTTTTAGCGGAATATAAGAAAC GTCTCTTAACTTTTAACTAAAAAA TT AGAACCGG TCTTAAATA 
  ||||||||||||||| |||||||||    |||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| ||||||||| G
  TCTCGTACTAATTAC CTCCAAAGA    TACT TAAAAATTGCCTTATATTCTTTG CAGAGAATTGAAAATTGATTTTTT GA TCTTGGCC AGAATTTAT 
AA               -         ATCC    C                       A                        C  T        A         A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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