Plant MITE

SE0410093

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2463
Brassica rapa
SE0410093
Tc1/Mariner
St12
A10:10784481-10784722
TA
TACTCCCTCTGTTTTTAAATGTAGGTAGTTTTAGCAAAAAG

Secondary structure and sequence

TSD TIR

5'

3'

                  A              GCA     A    -- - TTCACAATATAAGTAGTTTACATATTTCAATGCACATTTTTTATTTATTGGATATTGTGTGACCAATAAAAT
TACTCCCTCTGTTTTTAA TGTAGGTAGTTTTA   AAAAG ATTT  G T                                                                        
|||||||||||||||||| ||||||||||||||   ||||| ||||  | |                                                                         
ATGAGGGAGACAAAAATT ATATTCATCAAAAT   TTTTC GTGT  A A                                                                        
                  A              GAA     -    TT T AATCTTTCAACAATAGATTTTTTTATATAGTAAATTAGTTAATTAAGTTGGTTAATATTTTTCGAATTATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410093

TACTCCCTCTGTTTTTAAATGTAGGTAGTTTTAGCAAAAAGAATTTGTTTCACAATATAAGTAGTTTACATATTTCAATGCACATTTTTTATTTATTGGATATTGTGTGACCAATAAAATAATATTAAGCTTTTTATAATTGGTTGAATTAATTGATTAAATGATATATTTTTTTAGATAACAACTTTCTAAATATTTGTGCTTTTAAGTAAAACTACTTATAATTAAAAACAGAGGGAGTA

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