SE0430094

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2464
  • Brassica rapa
  • SE0430094
  • hAT
  • Hat30
  • A09:35870447-35870636
  • GGGTGGTG
  • GGTGGTGCAGGGCCGGTCTCGAGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
G G  G G   G        CG     --------------   -  A GTAACCGACCGCTTAGGGCATCATATTTTAAGCGAAAAATTTAGTTGTATATAGG
 G TG T CAG GCCGGTCT  AGCAT              AAG CG G                                                       
 | || | ||| ||||||||  |||||              ||| || |                                                        
 T GT G GTC CGGCCAGG  TTGTA              ACT CG A                                                       
G G  G G   A        --     AGAGTAAAAAAAGA   A  - GATTCGAGTAAATTTTAAAATACCGAAACAATAAATACATTTTTTTTAAAATACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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