SE0430095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2465
  • Brassica rapa
  • SE0430095
  • hAT
  • Hat31
  • A05:2506211-2506394
  • TCAGCCTC
  • GCCTCCAGGGGCGGACGTAGAGCATGAGCTACGGGAGCACGTGCCCCCATCTACTTTTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TCA  CTC          CG   A -     G   --C   A        C CC  C   ----------------TT     ATTC    --A    TAAACT
   GC   CAGGGGCGGA  TAG G CATGA CTA   GGG GCACGTGC C  AT TAC                  TTGAA    CATT   ACAA      
   ||   ||||||||||  ||| | ||||| |||   ||| |||||||| |  || |||                  |||||    ||||   ||||       
   CG   GTCCCCGCCT  ATC T GTGCT GAT   CCC CGTGTGTG G  TA ATG                  AACTT    GTGA   TGTT      
CTC  ACT          AG   C A     -   CAA   C        T TT  A   TGATATGTATTAAAAAAT     --CC    ATA    TATAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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