SE0430097

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2467
  • Brassica rapa
  • SE0430097
  • hAT
  • Hat33
  • A04:4507627-4507852
  • CGCAGGCA
  • GCAGGCACAGGGCCGGCTGAGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
C  AG  A           G -----------   ATAG        -------------G    GTGGGCCCAGGGCCCAATTTTTTTTTTTGCATAATTAGTGTTAATATGGGACTTGATTTT
 GC  GC CAGGGCCGGCT A           GGC    GGGCAAGG              GGGC                                                            
 ||  || ||||||||||| |           |||    ||||||||              ||||                                                             
 CG  CG GTCCCGGCCGA T           CCG    CCCGTTTT              TTTT                                                            
A  GA  C           G TCTTTTAATAC   GGGA        ATTAAAAAGTTTTT    AAATGTATATGAGATACCTATTGTATTTTTAAAACCCGGGGAAAATTTTAAAAAAAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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