Plant MITE

SE0410098

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2468
Brassica rapa
SE0410098
Tc1/Mariner
St5
A06:25900723-25900974
TA
TACTCCCTCCGTTCCTAAAATATGTATGTTCTGGA

Secondary structure and sequence

TSD TIR

5'

3'

         C   CC   AAT              --AAA    TT -  T  AAAAAGATACATTTTTTACCATTTCAATGTATGATTTTATGAAAAATTGTAAGTTTCAAAAATATTAATGGTGTT
TACTCCCTC GTT  TAA   ATGTATGTTCTGGA     AAAA  T GT TC                                                                           
||||||||| |||  |||   ||||||||||||||     ||||  | || ||                                                                           T
ATGAGGGAG CAA  ATT   TACGTATAAGATCT     GTGT  A AT AT                                                                           
         A   AA   CTC              GAAAA    -- T  A  TCTTTTGAGTAATTTATACGTAATAAAAAAACACTTATTGTTAAAAGGTATTGAAAATCGGTTATCTTTAAGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410098

TACTCCCTCCGTTCCTAAAATATGTATGTTCTGGAAAAAAAATTTGTTTCAAAAAGATACATTTTTTACCATTTCAATGTATGATTTTATGAAAAATTGTAAGTTTCAAAAATATTAATGGTGTTTATTGAATTTCTATTGGCTAAAAGTTATGGAAAATTGTTATTCACAAAAAAATAATGCATATTTAATGAGTTTTCTTAATATATGTGAAAAGTCTAGAATATGCATCTCTTAAAAACAGAGGGAGTA

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