Plant MITE

SE0410099

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2469
Brassica rapa
SE0410099
Tc1/Mariner
St1
A07:1558667-1558917
TA
TACTCCCTCCGTTTCAAAATAGATGATGTTTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

         C           GA   T        --G        - TGTTTCAAAATAGATGATGTTTTCATATATCAATGCACTTTTAACTTTATCAAAAACTGTGTAACCAATAATATTTTAT
TACTCCCTC GTTTCAAAATA  TGA GTTTTAAG   AGTTTTTG A                                                                               
||||||||| |||||||||||  ||| ||||||||   |||||||| |                                                                                
ATGAGGGAG CAAAGTTTTAT  ACT CAAAATTC   CACGTGTT A                                                                               
         A           GA   T        TAA        G TAATTCTTTGAACAAAAAATAAAATTTTTATAGTAATTTTATATCTAATTTTCAATAAGTTGGTTAGTGATTTGTATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410099

TACTCCCTCCGTTTCAAAATAGATGATGTTTTAAGGAGTTTTTGATGTTTCAAAATAGATGATGTTTTCATATATCAATGCACTTTTAACTTTATCAAAAACTGTGTAACCAATAATATTTTATAGTATGTTTAGTGATTGGTTGAATAACTTTTAATCTATATTTTAATGATATTTTTAAAATAAAAAACAAGTTTCTTAATAGTTGTGCACAATCTTAAAACTTCAAGTATTTTGAAACAGAGGGAGTA

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