SE0450100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2470
  • Brassica rapa
  • SE0450100
  • PIF/harbinger
  • To20
  • A09:27095796-27096057
  • AAT
  • TGGGTGTAACTGGTGACCAATGAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
AA     G          C  ----       --------AAA     T     - TTCATTAC  -------   -  AATTTTTTCTTACTATTTACAAGGAATTTTTTTTCCTTTGCATTCCTTCTCATTCCTTTTATTTTAT
  TGGGT TAACTGGTGA CA    ATGAATA           GGGAA AATGC A        AA       TTC CT                                                                   
  ||||| |||||||||| ||    |||||||           ||||| ||||| |        ||       ||| ||                                                                    
  ACCCA ATTGACCACT GT    TACTTGT           ATCTT TTTTT A        CG       ATT TA                                                                   
TA     G          A  AATG       AATATTTATTC     -     T --------  TCTCCTT   A  ATCTCCTTACTTTTCCTTTTATTAAAAAATAGTTAAAATCACTCCTTGTTAAAAAAAGATATAAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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