SE0450101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2471
  • Brassica rapa
  • SE0450101
  • PIF/harbinger
  • To1
  • A09:25862011-25862206
  • TAA
  • AGAGCATCTCCAACCCCACTCCATATTTTACTCCAAAATTGAGAAAATAGAGTGGGAAATGGAGCGATGAACAAAAAATAAAAAGATTACTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  A           C                                                                    A       -  AT
  AG GCATCTCCAAC CCACTCCATATTTTACTCCAAAATTGAGAAAATAGAGTGGGAAATGGAGCGATGAACAAAAAATAAAA GATTACT CT  
  || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  A
  TC CGTAGAGGTTG GGTGAGGTATAAAATGAGGTTTTAACTCTTTTATCTCACCCTTTACCTCGCTACTTGTTTTTTATTTT CTAATGA GG  
AA  C           A                                                                    C       T  AG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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