Plant MITE

SE0450102

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2472
Brassica rapa
SE0450102
PIF/harbinger
To22
Scaffold000232:38736-38988
TTA
AGGGTGTGACTGGTAATC

Secondary structure and sequence

TSD TIR

5'

3'

TT              A   ATCAT     CA -    - A     A AAAATGAATGAATAGGAATAAATTTTTAGGAATGATGGTTCCTTATCAAAATTGATGAGGAATTGATTTGTTCTATAATTCTCT
  AGGGTGTGACTGGT ATC     GGGAA  A TAGA A CGGAT G                                                                                    
  |||||||||||||| |||     |||||  | |||| | ||||| |                                                                                     
  TCCCACACTGACCA TGG     TTCCT  T GCTT T CCTTG T                                                                                    
AT              C   -----     -- T    C -     - GATACAAGGAATTATAAGGAATTTGTAAAATGGTAAGTACTCCTTATTCAAAAGGAAAAGTAAGTACAAGTAAGGAAATAAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450102

TTAGGGTGTGACTGGTAATCATCATGGGAACAATAGAAACGGATAGAAAATGAATGAATAGGAATAAATTTTTAGGAATGATGGTTCCTTATCAAAATTGATGAGGAATTGATTTGTTCTATAATTCTCTACAAATAAAGGAATGAACATGAATGAAAAGGAAAACTTATTCCTCATGAATGGTAAAATGTTTAAGGAATATTAAGGAACATAGTGTTCCTCTTCGTTTCCTTGGTCACCAGTCACACCCTTA

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