SE0430103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2473
  • Brassica rapa
  • SE0430103
  • hAT
  • Hat14
  • A09:32034405-32034960
  • GTATCAGC
  • GCTAGGGGTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTATCA             ------        --         GGTTCGGGTCGGGTATTTCGGATTTTCGGGTATTTCGGTATAGAGGTCTAGAACCCGTTCGGGTATTTCTGTACTTCGGGTCGGGTTCGGGTATTTTTAATTCGGATTCGGTTAATTCGGATCGGGTTCGGATATTTAGATTTTGAAGAAAAAAAAATGAAAATTTTCATTTCTCAAATTTCTTGTATTTAAATATATAACTTTTCACTTAACTATATTTTTTTCGTAATTGTATGTA
      GCTAGGGGTGGGC      GTTCGGGT  ACCCGTTCG                                                                                                                                                                                                                                              
      |||||||||||||      ||||||||  |||||||||                                                                                                                                                                                                                                               
      TGATCCCCACCCG      GGGCTATA  CTTCACCGT                                                                                                                                                                                                                                              
CGACTA             TGAAAT        GG         GGGCTTGGGCTAGGCTTTTTGGGCTTGGCTTTAGGCTTGGCTTCATCGTTTTATGGGCTTGCCCATAACTTATTCCTCTCTAACCTATGGGCTTGGGCTTGCCTATTATGGGCTTGGGTTTACCTATAGGCTTCTATTGGCTTGTATACATATTAATTGGAATATAAAGATCAAATGTAGAGAGTAAAATATATTTTATAAATATAACTATGATGTGTATTAAATTCAAGTATACTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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