SE0450104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2474
  • Brassica rapa
  • SE0450104
  • PIF/harbinger
  • To23
  • A02:21822331-21822530
  • TAA
  • AGGGCATCTTTATTGGTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         T      T   AT    -     GAGAGGGAGAGAGTCCCTTGTTTTTCTTTTTTTTTTTTTTTTTTTTTTGGTCATTAAAGAGTAAGGGA
  AGGGCATCT TATTGG GGG  GAAG AGAGA                                                                    
  ||||||||| |||||| |||  |||| |||||                                                                     
  TCCCGTAGA ATAACC CCC  AGGG ATTCC                                                                    
AA         C      -   --    A     ATAGGGAATCCCCTTCCCCCACCCTTGGCTCCTTCTTTCTCTTCCCTTTTCGGGAATTAATTCCCGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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