Plant MITE

SE0430106

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2476
Brassica rapa
SE0430106
hAT
Hat34
A03:20292724-20293415
CTTAAACC
CTGGGTTTAAA

Secondary structure and sequence

TSD TIR

5'

3'

CTTAAACC           A   C   TCAA  -      GC  ----     AA        T   CTCAAAGCTATAGCGTCGCTTCAGACCGCCTCACCAACTTAAGGCGTAGCCTGAAAAAATACACATAGGATTAGTGGTTAGTCATAGAATGATTCAGGTTCTTCCATTCTTTGTCATTATCCTAAATCATTAAAATTAAAAATTAATAAGTATTCATAAACAGAGCATAAAACAGAGAATTGATCCAATAAAGTCTTCAAAAAAAGAGAATCAAACCAACAAATCCTTAAAAGAAACTAAACATAAACCTAAGTCTTCATAGATTTAGAAACAAAAGATTTATAGAA
        CTGGGTTTAAA TAG GCT    GC CTTGAG  GG    TGAGG  GGTCAAGC CGC                                                                                                                                                                                                                                                                                               
        ||||||||||| ||| |||    || ||||||  ||    |||||  |||||||| |||                                                                                                                                                                                                                                                                                                
        GACCCAAATTT TTT CGC    AC ATTCCG  CA    TTCCG  CACTCCGC TGG                                                                                                                                                                                                                                                                                               
CCAAATTC           -   -   ----  G      --  GCGA     --        -   AACCAACCCTCCCAGTGGCGGAGCTCCTCTACTTCGCTCCGCTTAAGCTCATTCGCAACGAAGTTGGAGCGGAGTTCAGCGGAAAGTGCGGAGTGCGGAGTAGTGCGAAGTAGCGAATACGTTGATTTCCATTCTAAGGATAGTGTTCAATAATTGTATATTATAAATGAAAGAAAAATACCAAAGTTTTGAAGTTAAGTGAAGTTTGATAAATCACAGAAATGTAAAAACTTATCTATAAAAGTTCGCACTTAGAATAGGTTCAGATATAAGAAAAAAAAAAGACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430106

CTTAAACCCTGGGTTTAAAATAGCGCTTCAAGCCTTGAGGCGGTGAGGAAGGTCAAGCTCGCCTCAAAGCTATAGCGTCGCTTCAGACCGCCTCACCAACTTAAGGCGTAGCCTGAAAAAATACACATAGGATTAGTGGTTAGTCATAGAATGATTCAGGTTCTTCCATTCTTTGTCATTATCCTAAATCATTAAAATTAAAAATTAATAAGTATTCATAAACAGAGCATAAAACAGAGAATTGATCCAATAAAGTCTTCAAAAAAAGAGAATCAAACCAACAAATCCTTAAAAGAAACTAAACATAAACCTAAGTCTTCATAGATTTAGAAACAAAAGATTTATAGAACCAGAAAAAAAAAAGAATATAGACTTGGATAAGATTCACGCTTGAAAATATCTATTCAAAAATGTAAAGACACTAAATAGTTTGAAGTGAATTGAAGTTTTGAAACCATAAAAAGAAAGTAAATATTATATGTTAATAACTTGTGATAGGAATCTTACCTTTAGTTGCATAAGCGATGAAGCGTGATGAGGCGTGAGGCGTGAAAGGCGACTTGAGGCGAGGTTGAAGCAACGCTTACTCGAATTCGCCTCGCTTCATCTCCTCGAGGCGGTGACCCTCCCAACCAAGGTCGCCTCACGCCTTAGCGACGCCTTAGCACGCTTTTTTAAACCCAGCTTAAACC

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